PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 250aa    MW: 28825.7 Da    PI: 5.041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005144genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.52.5e-4081363127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  +G rFhP++e+lv++yLk k+ g ++++ ++i+ev+++k+ePw+L  +   +v+++e+ wyf s+ d ky ++kr+nr+tk+gyWk tg+++ v ++ 
  Lus10005144   8 VGWRFHPSEEQLVNRYLKLKMLGYDHDV-RHIAEVNVNKFEPWQLLgQassEVDSDESVWYFLSCPDYKYVNSKRSNRTTKKGYWKPTGRERIVRAEs 104
                  79*************************9.88**************6334556777888**********************************999987 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                  ++e++g+kktLvfykgr   g+ktdW+mhey+
  Lus10005144 105 TNEEIGTKKTLVFYKGRVLGGVKTDWIMHEYK 136
                  7888***************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.1666155IPR003441NAC domain
SuperFamilySSF1019411.83E-437153IPR003441NAC domain
PfamPF023651.6E-218136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSNASRVGW RFHPSEEQLV NRYLKLKMLG YDHDVRHIAE VNVNKFEPWQ LLGQASSEVD  60
SDESVWYFLS CPDYKYVNSK RSNRTTKKGY WKPTGRERIV RAESTNEEIG TKKTLVFYKG  120
RVLGGVKTDW IMHEYKPLFS FPNQRDFLLY KLMDKSSSST STNDDDEEQP NVERGESSTG  180
MSSNFPNPNP SSYENAPIPI EPKENSQLQA DLDGFSGYDE MSYNLNSVTQ QPWTWNTDEN  240
LSYDHSFYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-32915920169NO APICAL MERISTEM PROTEIN
1ut4_B4e-32915920169NO APICAL MERISTEM PROTEIN
1ut7_A4e-32915920169NO APICAL MERISTEM PROTEIN
1ut7_B4e-32915920169NO APICAL MERISTEM PROTEIN
3swm_A4e-32915923172NAC domain-containing protein 19
3swm_B4e-32915923172NAC domain-containing protein 19
3swm_C4e-32915923172NAC domain-containing protein 19
3swm_D4e-32915923172NAC domain-containing protein 19
3swp_A4e-32915923172NAC domain-containing protein 19
3swp_B4e-32915923172NAC domain-containing protein 19
3swp_C4e-32915923172NAC domain-containing protein 19
3swp_D4e-32915923172NAC domain-containing protein 19
4dul_A4e-32915920169NAC domain-containing protein 19
4dul_B4e-32915920169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301328.12e-66hypothetical protein POPTR_0002s15560g
TrEMBLB9GPV52e-66B9GPV5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15560.17e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-39NAC transcription factor-like 9